PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG579300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 333aa    MW: 35948.6 Da    PI: 4.5249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG579300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12163205754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pavir.9KG579300.1.p 163 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 205
                          79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16161233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9163205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-5169210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRGEAA PWQGYPGGVM MSDLLFYGAD ARSGGGMDLP PFQELVPMPP  60
AAPPHEEFNF DCLSEVCNPY RSSGVAAPGE AAPGQTLDAP LHDAMVDEEP SGDKGQCYGG  120
GGSSPTFVFG GGAGESSEMA PIRGVGGPHH KTKLHGAPSK NLMAERRRRK RLNDRLSMLR  180
SIVPKISKMD RTSILGDTID YVKELTERIK ALEEEIGASP EDLNLLNTLK DYSSNSNNEM  240
MVRNSTKFDV EKRDNGSTKI EICCPTNPGV LLSTVNALEV LGLEIEQCVV SCFSDFGMQA  300
SCLQEDGKRQ VISTDEIKQA LFRSAGYGGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25420.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647151e-178EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSL11e-66BH093_ARATH; Transcription factor bHLH93
TrEMBLK4AC630.0K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-67beta HLH protein 93